PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597848.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 231aa    MW: 24893.8 Da    PI: 10.337
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.41.2e-38321932110
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                     a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a++ ss++ + s++        
  XP_013597848.1  32 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTAVRGSSTTISTSANctlsssld 126
                     789*************************************************************9999999977777766665555567777788 PP

             TCP  89 ...............................................kaaksaakskksqksaasalnl 110
                                                                    +  ++   ++++q++++++++ 
  XP_013597848.1 127 hkpfilgkrlredsgggkeemgsfatpagfwavparpdfgqvwsfasH--QEMFLQQQQQQQQQQQQAA 193
                     888889999999999999999999999999999999999999997532..2222233333332222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.7E-3438193IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8923892IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSNNNNDGVM ISNGSLIEHQ QNQKQSSHGA LAVKKPPAKD RHSKVDGRGR RIRMPIICAA  60
RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTAVRGSS TTISTSANCT  120
LSSSLDHKPF ILGKRLREDS GGGKEEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ  180
QQQQQQQQQQ QAAMGEASAA RVGNYLPGHL NLLASLSGGA PGSGRREDDQ R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597848.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597848.11e-171PREDICTED: transcription factor TCP7-like isoform X2
SwissprotQ9FMX21e-100TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0D3DDC81e-156A0A0D3DDC8_BRAOL; Uncharacterized protein
STRINGBo7g097790.11e-157(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-73TCP family protein