PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597847.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 241aa    MW: 25957 Da    PI: 10.337
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597847.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.37.6e-40322052121
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                     a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a++ ss++ + s++        
  XP_013597847.1  32 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTAVRGSSTTISTSANctlsssld 126
                     789****************************************************************9999977777777665555577778888 PP

             TCP  89 ..............................................kaaksaakskksqksaasalnlakesrakarar 121
                                                                   ++++   +++++q+++a+al ++++++++a + 
  XP_013597847.1 127 hkpfilgkrlredsgggkeemgsfatpagfwavparpdfgqvwsfaSHQEMFLQQQQQQQQPAAALFVHQQQQQQAAMG 205
                     9999999999999999****************************96444444477777777777777777766666544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3338196IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8923892IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSNNNNDGVM ISNGSLIEHQ QNQKQSSHGA LAVKKPPAKD RHSKVDGRGR RIRMPIICAA  60
RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTAVRGSS TTISTSANCT  120
LSSSLDHKPF ILGKRLREDS GGGKEEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ  180
QQQQQQQPAA ALFVHQQQQQ QAAMGEASAA RVGNYLPGHL NLLASLSGGA PGSGRREDDQ  240
R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597847.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597847.11e-179PREDICTED: transcription factor TCP7-like isoform X1
SwissprotQ9FMX21e-105TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0D3DDC81e-177A0A0D3DDC8_BRAOL; Uncharacterized protein
STRINGBo7g097790.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-66TCP family protein