PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597423.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 1114aa    MW: 124295 Da    PI: 6.0301
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.43.9e-28551381092
             TCP  10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                     k++ k +g+ RR R++a+caar+F+L+ eLG+++d++tieWLlqqa+pa  ++tgt+s++a+ +  ++s +ss+s+ s++ ++k
  XP_013597423.1  55 KRSRKDDGKVRRLRMPALCAARLFQLTGELGHKSDGETIEWLLQQAEPALVAATGTGSIPANYSsLNVSLRSSGSTLSAPPSSK 138
                     89999***************************************************9999977778888888888666663332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136916.90553107IPR017887Transcription factor TCP subgroup
PfamPF036344.7E-2664167IPR005333Transcription factor, TCP
PfamPF004032.8E-5197238IPR006121Heavy metal-associated domain, HMA
PROSITE profilePS5169720.394300397IPR006936ALOG domain
SuperFamilySSF522002.75E-6402500IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF009311.0E-20533777IPR002182NB-ARC
SuperFamilySSF525401.37E-35537769IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.7E-4546680IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.0E-16548563No hitNo description
PRINTSPR003643.0E-16624638No hitNo description
PRINTSPR003643.0E-16710724No hitNo description
SuperFamilySSF467851.2E-5745849IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.40.50.3001.2E-10797848IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520584.76E-318671106IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.9E-248741104IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077258.4E-10934953IPR011713Leucine-rich repeat 3
PRINTSPR003643.0E-1610231039No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0030001Biological Processmetal ion transport
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MDISDDDDDS DARGGSPHLV YPSLKIVPKS AFPEDATLAT TSSSPAAATS GVITKRSRKD  60
DGKVRRLRMP ALCAARLFQL TGELGHKSDG ETIEWLLQQA EPALVAATGT GSIPANYSSL  120
NVSLRSSGST LSAPPSSKSV PLYGAPAASG DLTPPILGFQ RPSSLISEVT KEPGPEKSSK  180
NKLVLELDIG GDKSMQKKVM KKLAALSGIN YISLDPETGT FTIKGDIELN TVLEKVERYC  240
SCKRVVEPKK KDQQSVLQGE VSMGEALTSE QILRSTAGSG DSCSGINIPV VPGKSIITPS  300
NVRNLDDAWY SFCDFLDQRM RPLTLSGYTA KDAIDFLSTR QTSGNTEALV RRLSAACEAF  360
GITTKENPFR SLAVITYLKE TRAITREADG VLVFSCNDNL DEDETHLIEA ISKELHEQGV  420
TPLTYNLYQR DLDGDMLYRS SVGIMVVSNS FAFSSQSLDL LVAIMEFCKA KRLVIIPVYL  480
KADRIQKWKE ALTDVASIDG HQWSEGSQFM LAKKVVRNAC FRLHLKSSKN LVRILALLNH  540
PQPLEAEIEG IWGMAGIGKT SIAREIFELL APQYDLCYFL QDFHRMCKSK GLRQIRDDFL  600
SKVFREEELC LGACDTKPSF MRDWFLNREI LVVLDDVSNA RDAEYVFGGF SWFSRGHRII  660
LTSRSKQVLV QCKVKEPYEI QKLSDFESFR LCKQYLKEES AIMSELMSCS SGIPLALKSF  720
VSSVSKQHMN DMKKHLQSLR INPPTKIQEA FRRSFDGLDE NGKNIFLDLA CFFRGENKEH  780
VVQLLDACGF FTYLGICDLI DESLISLLDN KIEIPIPFQD IARFIVREED MDPCERSRLW  840
DSNDIIDVLT NNSGTEAIEG IFLDASDLTC ELSPTVFSNM YRLRLLKFYC SNTSGNQCKQ  900
SLPQGLDTLP DELRLLHWEH YPLGYLPQKF SPENLVEINM PYSNIEKLWE GKKNLEKLKK  960
IKLSHSRKLT DVLTLSEAMN LEHIDFEGCT SLIDVSTSIT HLGKLVSLNM KDCCQLRRLP  1020
SMVDLTSLKV VNLSGCSGLE DIQDFSPNLE ELYLAGTAIR ELPFSVENLT ELSTLDLENC  1080
VRLQKLPSGV RNSRSIVNLK LSGCTSLELG KRKR
Functional Description ? help Back to Top
Source Description
UniProtDisease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269|PubMed:15165183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597423.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597423.10.0PREDICTED: probable WRKY transcription factor 19 isoform X2
SwissprotF4JT780.0RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBLA0A0D3A4E20.0A0A0D3A4E2_BRAOL; Uncharacterized protein
STRINGBo1g021620.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.11e-132WRKY family protein
Publications ? help Back to Top
  1. Meyers BC,Morgante M,Michelmore RW
    TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes.
    Plant J., 2002. 32(1): p. 77-92
    [PMID:12366802]
  2. Sinapidou E, et al.
    Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis.
    Plant J., 2004. 38(6): p. 898-909
    [PMID:15165183]
  3. Kempema LA,Cui X,Holzer FM,Walling LL
    Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids.
    Plant Physiol., 2007. 143(2): p. 849-65
    [PMID:17189325]