PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597362.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 403aa    MW: 44149.4 Da    PI: 4.7515
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.63.3e-37112209297
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                     lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke++f+++hdq +f++s+k
  XP_013597362.1 112 LFQRLWTDEDEIELLRGFLDYiTTHRGTSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVVFKSSHDQATFDISRK 206
                     79*******************999****99999************************************************************** PP

          DUF573  95 iWg 97 
                     iW+
  XP_013597362.1 207 IWN 209
                     **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-33113209IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSPSDEREAV FSLESPELEE DGGAGGGGET DSDEEAVMPE PNDHEYEDLN SPLVTVTAKS  60
SSAATDTVTV ALPSGSAVPV SSIPADSDPK WHRTTEIVHL RPPPPLDDSR RLFQRLWTDE  120
DEIELLRGFL DYITTHRGTS SHPPDTAPFY EQIKSKLQLE FNKNQLVEKL RRLKKKYRNV  180
MSKFSSGKEV VFKSSHDQAT FDISRKIWNP TGKIIGFEDN NVMEFEETNG NNAHVEVDSE  240
NVLEKKVTMS SGSRKRPRSR IGKIDEDKAV SLSDGPVPSV NLNENVSAFG EFGDGRNLGG  300
LIEETVKSCV SPLIKEMMNG TTGMMMAAVG GFPGGGGAHA MGVLSPMLMP SVNPLGFGGG  360
GVGDERWRRQ QILELEVYSR RLELVQEQIR ATVNELKTMP SGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597362.10.0PREDICTED: mediator-associated protein 1
TrEMBLA0A0D3DCD10.0A0A0D3DCD1_BRAOL; Uncharacterized protein
STRINGBra009986.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-172DNA-binding storekeeper protein-related transcriptional regulator