PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596276.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 433aa    MW: 48323.2 Da    PI: 4.971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3074.4e-94314192373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lLl+cA+a++s+d++l+q++++ +++las+dgd++qRla+ +++AL +r a +++  ++ l  +s+++e+ +  ++  l +f++++P+++f++
  XP_013596276.1  31 EQLLLHCANAIESNDATLTQQTIWVINNLASSDGDSTQRLASSLLRALISRAATKSPA-FSFLsVASASHETLHRFSVIELAAFVDLTPWHRFGF 124
                     79***************************************************95555.555514444444335555555555************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.. 181
                     ++aN aIl+av+g + vHi+D+++++++Q p+L++++a++     ++pp l++T+v s+++       ++ee+g +L +fA++ +v +ef+++  
  XP_013596276.1 125 IAANAAILDAVKGYSSVHIVDLSLTHCMQIPTLIDSMATKLinkeQPPPLLKLTVVLSESPPpplLGISYEELGLKLVSFAATRNVAMEFRIIys 219
                     **************************************99887778899*********88878888999***********************955 PP

            GRAS 182 .vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                      +++ l++l +e+Lr++p   +Eal+Vn++++lh+++++++s +s  r+ +Lk +++l+P++v+++e++ad +s++F +r+ + ++y++  +d+ 
  XP_013596276.1 220 sYSDGLSSL-IEQLRLDPlvcNEALVVNCHMMLHYIPNDTLSYSSpSRSLFLKELRDLNPTMVTLIEEDADFTSSNFIARLRSLFNYMWIPYDTA 313
                     444556666.9********************************9988999********************************************* PP

            GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....eesgslvlg 361
                     ++ l   se+r+++E+  +g++i nvva+egaer+er e +++W er++ea F+ v ++e +a +++++l++++ ++g++ +    ++ + +vl+
  XP_013596276.1 314 DTFLTCGSEQRQWYEAD-IGWKIDNVVAKEGAERVERLEPKSRWFERMREADFTGVGFGEAVAREVQTMLEEHAaGWGMKRDvddsDDVERFVLT 407
                     *****************.********************************************************9999887755544578899** PP

            GRAS 362 WkdrpLvsvSaW 373
                     Wk++++v++SaW
  XP_013596276.1 408 WKGHSVVFASAW 419
                     ************ PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.5574395IPR005202Transcription factor GRAS
PfamPF035141.5E-9131419IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MNKAMILNPT RPVWPGFSSS KSLCGDANCM EQLLLHCANA IESNDATLTQ QTIWVINNLA  60
SSDGDSTQRL ASSLLRALIS RAATKSPAFS FLSVASASHE TLHRFSVIEL AAFVDLTPWH  120
RFGFIAANAA ILDAVKGYSS VHIVDLSLTH CMQIPTLIDS MATKLINKEQ PPPLLKLTVV  180
LSESPPPPLL GISYEELGLK LVSFAATRNV AMEFRIIYSS YSDGLSSLIE QLRLDPLVCN  240
EALVVNCHMM LHYIPNDTLS YSSPSRSLFL KELRDLNPTM VTLIEEDADF TSSNFIARLR  300
SLFNYMWIPY DTADTFLTCG SEQRQWYEAD IGWKIDNVVA KEGAERVERL EPKSRWFERM  360
READFTGVGF GEAVAREVQT MLEEHAAGWG MKRDVDDSDD VERFVLTWKG HSVVFASAWV  420
PMNRVDGCSH VEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-471542118420Protein SHORT-ROOT
5b3h_E2e-471542118420Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596276.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596276.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_013690820.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A078FIM70.0A0A078FIM7_BRANA; BnaC07g15890D protein
TrEMBLA0A0D3D8470.0A0A0D3D847_BRAOL; Uncharacterized protein
STRINGBo7g063640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein