PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596119.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18422.6 Da    PI: 10.532
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.4e-161150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i++ks r vtf kR++gilKK +EL +LC+ +++ ii+s 
  XP_013596119.1 11 ISDKSTRRVTFRKRKEGILKKINELTILCGLRACAIIYSD 50
                    99************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.927150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-21184IPR002100Transcription factor, MADS-box
CDDcd002662.06E-21285No hitNo description
PRINTSPR004046.8E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGRRKVTHQL ISDKSTRRVT FRKRKEGILK KINELTILCG LRACAIIYSD YKDGPEVWPN  60
RREVRVLLNR FSALPKEKQT KYMMDQKDLM TRMIQDAKKK LEKEKMHSRA MELGTIAAFN  120
DLHDADHSED LIKAADVVEK RINVIRERIK ALESRVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLISDKSTRRVTFRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596119.11e-112PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0D3D7B21e-112A0A0D3D7B2_BRAOL; Uncharacterized protein
STRINGBra012335.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-83AGAMOUS-like 87