PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594117.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 314aa    MW: 34700.7 Da    PI: 5.7618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594117.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-19116166155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+W+AeIrdp     r  r +lg+f taeeAa  ++ a+ +l+g
  XP_013594117.1 116 KKYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFNTAEEAALVYDSAAIQLRG 166
                     59********.**********72....45*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.23E-32116173No hitNo description
Gene3DG3DSA:3.30.730.102.3E-30117174IPR001471AP2/ERF domain
PROSITE profilePS5103223.907117174IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21117175IPR016177DNA-binding domain
SMARTSM003809.7E-39117180IPR001471AP2/ERF domain
PfamPF008472.0E-12117166IPR001471AP2/ERF domain
PRINTSPR003671.1E-10118129IPR001471AP2/ERF domain
PRINTSPR003671.1E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEPEKNLVLP PKIKFTEHKT NTTRTVPGFN NQHNQQPRII RISVTDPDAT DSSSDDEEET  60
HQRFASKRRR IKKFVNEVVL DSGAASTGSS TQIEPKKRRN RAVIVKPEPA SAPPEKKYRG  120
VRQRPWGKWA AEIRDPLRRV RLWLGTFNTA EEAALVYDSA AIQLRGPDAL TNFSVPPPSS  180
PKSPPPSPVK KKSKIKDDVA SSSVSSDCLR SPVSVLRSPF TVDETSAVIV REEPSTTTAS  240
ETFSDFSAPL FADDDLFDFR SDFLAGDLFG EDLFADACTG MSFGFDFGSG LSSWHVEDHF  300
QDIGDLFGSD PLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20116173159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20116173462ATERF1
3gcc_A2e-20116173462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594117.10.0PREDICTED: ethylene-responsive transcription factor CRF2
SwissprotQ9SUQ21e-142CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A078DY020.0A0A078DY02_BRANA; BnaC07g38490D protein
TrEMBLA0A0D3DFR10.0A0A0D3DFR1_BRAOL; Uncharacterized protein
STRINGBra019270.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-90cytokinin response factor 2