PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592228.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 356aa    MW: 37338.3 Da    PI: 7.1815
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.98.5e-3943129492
             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas...nsssgkaak 92 
                      k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  ++   +      ++
  XP_013592228.1  43 VKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNASLRGGGGgfaQ------SS 129
                     5899***************************************************************888422222222222211......11 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-3547149IPR005333Transcription factor, TCP
PROSITE profilePS5136927.48947101IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
METRTVEEAS LQLNSTENPS PGGGSVPTTS SNTAALAVVK SAVKKPSKDR HTKVDGRGRR  60
IRMPAVCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNASLRG  120
GGGGFAQSSK SSSLQMSFHG SGMSLYDDSN GSNGSSSSAV VDHSRKLLNG GVFGFHHPPI  180
MSAERNPYRE DYFKESEVAG GSSQKPGQFQ DQEIGPGMGR GAPTASVVPQ PMWAVAPGST  240
NGGSAFWMLP MSGSGGREQM QQQQQPGHQM WSFNPGSYPV GAGRVVTAAP MGSMMLGGQQ  300
LGLGVAEGNM AAALRGGREG DGLGMTLEQH QHQHHQQHQE PNNQGEASEN GGDDKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.32150.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592228.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592228.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G41e-160TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A0D3D0060.0A0A0D3D006_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GYA00.0A0A3P6GYA0_BRAOL; Uncharacterized protein
STRINGBo6g114530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.13e-86TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]