PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592109.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 271aa    MW: 31005.7 Da    PI: 7.5358
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592109.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.37.1e-122365546
                    SHHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  5 nksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgkl 46
                    n+++ + +f   R ++ilKKA ELS+LC+ e++vi +  +g+l
  XP_013592109.1 23 NQTRFKKSFlLLREKTILKKALELSILCENEICVIHYDREGNL 65
                    4444444431349************************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00791271IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-1221106IPR002100Transcription factor, MADS-box
PfamPF003191.9E-63565IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.1663565IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDSLSSSSTS TKMKNNNKLS VRNQTRFKKS FLLLREKTIL KKALELSILC ENEICVIHYD  60
REGNLVNAYP EDQCQVKDIL QRYNRLSDRE KVKKNTNLSQ FYNKKLVDEK RRSLTDAEER  120
KRFTKKVGAF KGSLEDKLQI VKDRVRDLLY SQDHQTEPDQ SPCLDVMSQQ NHNFPGSSSG  180
FFFPNELSDP WMNFSPHDLD QQQSFTNLLM SGDHVSASSD QYLLGPASCA TDASNHESKF  240
SVFLFNHETA TFTQLPNSAS SSFDQGLIGT Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591122.10.0PREDICTED: agamous-like MADS-box protein AGL93
RefseqXP_013592109.10.0PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A0D3CP910.0A0A0D3CP91_BRAOL; Uncharacterized protein
STRINGBra018741.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.19e-39AGAMOUS-like 89