PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013591138.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 300aa    MW: 33879.1 Da    PI: 7.7114
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013591138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.5e-06143162120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C k+F+r  nL+ H+
  XP_013591138.1 143 FSCHVCFKTFNRYNNLQMHM 162
                     89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.7E-5135165No hitNo description
PROSITE profilePS5015710.055143170IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-4143162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
SuperFamilySSF576678.1E-6208247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MFSSLSNHCS PHSMDCGIYS SSSSENPRDH FQFLDLFPNI TQNPNNNNTL IEPLPLIDRI  60
NLNSNLNLKS RPSYVGEGDD EVEDEENVVV DVSLHIGLPG SGNSSNGKEI VTYDAGKDIE  120
NEVSGKAYWI PTVDQIIIGF THFSCHVCFK TFNRYNNLQM HMWGHGSQYR KGPESLKGTQ  180
PRAMLGIPCF CCVEGCRNHI DHPRSKPLKD FRTLQTHYKR KHGQKPYACR ICGKLLAVKG  240
DWRTHEKNCG KRWVCVCGSD FKHKRSLKDH VKAFGPGHGS YPTDLFDEHA SYSSVSETLF
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269|PubMed:11782451}.
UniprotTISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269|PubMed:11782451}.
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013591138.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591138.10.0PREDICTED: protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-164TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A1L6BXE00.0A0A1L6BXE0_BRANA; TRANSPARENT TESTA 1 family isoform 1
STRINGBo6g044010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-149C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]