PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590904.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 354aa    MW: 40233.9 Da    PI: 5.8637
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.13.2e-38852352128
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec.eaesssssasns 85 
                     a+kkdrhskihT++g+R RRvRls+ + ++fFdLqd+LGfdk+skt++WLl+++ +aikel++           +++  + + e++         
  XP_013590904.1  85 AVKKDRHSKIHTAQGLRERRVRLSIGISRQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkklnnnvedfGNEGGNVVhEED--------- 170
                     89**************************************************************4443333322111112222111......... PP

             TCP  86 ssg.......................kaaksaakskksqksaasalnlak.esrakarararertre 128
                       +                       ++   + k+ +++k++++++n +   sraka+ +a+  tr+
  XP_013590904.1 171 --DydydddnvgdnnfvyglspysfeEEVLCEVKKAEKRKKKTEMSNTSSkGSRAKAKGKAKGLTRD 235
                     ..12233444556788999999999744444445555555555666665559999999999887775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3686234IPR005333Transcription factor, TCP
PROSITE profilePS5136933.93987145IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSSSNNGYNN GSNNGVFPLS LYLSSLSGHQ DIICNPYNHQ LTASPGQMVS AVPESLMDYM  60
AFNSNNVMNQ QGFEIPEVSR EMKKAVKKDR HSKIHTAQGL RERRVRLSIG ISRQFFDLQD  120
MLGFDKASKT LDWLLKKSRR AIKELVQEKK LNNNVEDFGN EGGNVVHEED DYDYDDDNVG  180
DNNFVYGLSP YSFEEEVLCE VKKAEKRKKK TEMSNTSSKG SRAKAKGKAK GLTRDMINDH  240
PETASEIIQT EIMDPFKRSI IFNEGEEMTH SFYKESIQES DNHECITKTK VNLPMNMDQG  300
YNQHYGALML KDQGSSSNYN AILPQNLDCD YNPNPFIDQL FCGVTNTNFF RGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1492145154Putative transcription factor PCF6
5zkt_B4e-1492145154Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590904.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590902.10.0PREDICTED: transcription factor TCP1-like
RefseqXP_013590903.10.0PREDICTED: transcription factor TCP1-like
RefseqXP_013590904.10.0PREDICTED: transcription factor TCP1-like
RefseqXP_013722428.10.0transcription factor TCP1-like
SwissprotQ9FYG71e-157TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A0D3CY480.0A0A0D3CY48_BRAOL; Uncharacterized protein
STRINGBo6g099040.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-139TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]