PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 322aa    MW: 36459.1 Da    PI: 8.7085
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.21.1e-411032283133
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa.k 96 
                     +k+drhski+T++g+RdRR+Rls ++a++fF Lqd+LGfdk+sktieWL+ q+k++i +  ++  +++   e ++++ +++     ++ak+++ k
  XP_013590580.1 103 KKRDRHSKICTAQGPRDRRMRLSQQIARKFFNLQDMLGFDKASKTIEWLISQSKASIRKVKES-VDASGGGEGDDEHLQDN-----EKAKEETmK 191
                     699************************************************************.44442223333333333.....455555549 PP

             TCP  97 skksqksaasalnlakesrakarararertrekmrik 133
                      +++++++ +++ ++kesr+kar+rarert  km+++
  XP_013590580.1 192 VSRRRTKTVENSCKKKESREKARERARERTLTKMKMR 228
                     9999999999999999*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-33103165IPR005333Transcription factor, TCP
PROSITE profilePS5136933.366104162IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.068207226IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MFPSLDTSGY DLFDPFNPHQ ATMLPFFTTP IQSPSSHHHY PLSSFPFSSD FLDESVLISS  60
FLLAQQDAAT HVADCPRKLC KKLEDKCVGG TTLEKVPRRR TGKKRDRHSK ICTAQGPRDR  120
RMRLSQQIAR KFFNLQDMLG FDKASKTIEW LISQSKASIR KVKESVDASG GGEGDDEHLQ  180
DNEKAKEETM KVSRRRTKTV ENSCKKKESR EKARERARER TLTKMKMRIS GLIDTSKIFS  240
DPIQESQKIE LTGGAQVEGK SPEQESSTTN VNMVEYQMDS VRTIEKFLGL NSDASSSSIF  300
GDSEESYASL SQLEVLLQKQ EW
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}.
UniprotTISSUE SPECIFICITY: Expressed in axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590580.10.0PREDICTED: transcription factor TCP12-like isoform X1
RefseqXP_022559724.10.0transcription factor TCP12-like
SwissprotA0AQW41e-123TCP12_ARATH; Transcription factor TCP12
TrEMBLA0A078H8050.0A0A078H805_BRANA; BnaC06g29550D protein
TrEMBLA0A0D3CZ230.0A0A0D3CZ23_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GUI80.0A0A3P6GUI8_BRAOL; Uncharacterized protein
STRINGBo6g107240.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-102TCP domain protein 12