PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590528.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 351aa    MW: 40052.6 Da    PI: 5.2237
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590528.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.27.2e-39832321129
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec........eaesssssa 82 
                     +a+kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++      +      +        e   ++ ++
  XP_013590528.1  83 QAVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQGkkvntD--ED--FaniggeveE---EEDEE 170
                     589************************************************************99765331..22..2234432221...11111 PP

             TCP  83 snsssg................kaaksaakskksqksaasalnlak.esrakarararertrek 129
                     +++  +                +++  + k+ +++k++ + +n++   srakar +a+e tre 
  XP_013590528.1 171 DEE--DdgdksfvygsspdsleEEMVCEVKKAQKRKKKIELRNISSkGSRAKARGKAKEITRET 232
                     111..1234466778888888777888888888888888888888779***********99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3885233IPR005333Transcription factor, TCP
PROSITE profilePS5136933.90886144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSSSNNDYNN GNNGVYPFSL YLSPLAGRQD IIRNPYNHQP TPSPGQMVSA VPESLINYMS  60
FSSNRAVNQQ GFEIPEVSRE IKQAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM  120
LGFDKASKTL DWLLKKSRRA IKELVQGKKV NTDEDFANIG GEVEEEEDEE DEEDDGDKSF  180
VYGSSPDSLE EEMVCEVKKA QKRKKKIELR NISSKGSRAK ARGKAKEITR ETTYDHPETI  240
SEITQTEIMD PLKRSIIFNE GEDMTHSLCK EATQEFDSQE CTLSKTKVNL PTNMDQSYNQ  300
HYGTFMLKDQ GSSSNYNNIL PQNLDFYYDQ NPFIDQPFCA VTKTNFPRGF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1391144154Putative transcription factor PCF6
5zkt_B6e-1391144154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202VKKAQKR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590528.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590528.10.0PREDICTED: transcription factor TCP1-like
RefseqXP_013590529.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-161TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A0D3CYL40.0A0A0D3CYL4_BRAOL; Uncharacterized protein
STRINGBo6g103670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-147TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]