PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587988.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 660aa    MW: 76303.3 Da    PI: 7.6264
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.15.4e-2272155189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn YA+evGF+vr+++s  ++r++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ l+HnH+l
  XP_013587988.1  72 NYYNCYANEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRVNDAN-----RVRKETRTGCPAMVRMRQVDSKRWRVLEVTLDHNHSL 155
                     69****************************************99988.....99*********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1972155IPR004330FAR1 DNA binding domain
PfamPF105511.8E-23262354IPR018289MULE transposase domain
PROSITE profilePS509669.606544580IPR007527Zinc finger, SWIM-type
PfamPF044349.6E-5552576IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MERSDSGDVD VQASAYLQTD ETHERDEADH DAVFTQNEQR KSEHQEEEFV EGKEFDAPAV  60
GMEFDSYDDA YNYYNCYANE VGFRVRVKNS WFKRRSKEKY GAVLCCSSQG FKRVNDANRV  120
RKETRTGCPA MVRMRQVDSK RWRVLEVTLD HNHSLGYKSV KRTGTKRKCA DSSIKLYKAR  180
VMDVGNSVNT NSTLKKQFQS SSPDVLNLRR GDSSAIYNYF CRMQLTNPNF FYLMDINDEG  240
QLRNVFWADG FSRVSCSYFN DVAFIDNAYI SGKFEIPLVT LVGVNHHGQT TLLGCGLLAG  300
ETVESYHWLL KVWFGLMKCS PQTIVTDRCK PLEAAVSQVF PRSHHRFSVA HIMRKVPEKL  360
GGLVSYDGVR KAFTKAVSET LKVVDFEAAW GFMVHSFGVV DNEWLRSLYE DRARWAPVYL  420
TDTFFAGLAT CRPGESLNPF FERYVHKQTP LKEFLDKYEL ALHRKHREET LAESESLTLK  480
TKCSFETQLS RVYTREMFKK FQVEVEEMYS CFSTTQVHVD GPLVIFLVKE RVQGESNRRE  540
VRDFEVLYNR SVGEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPLRYVL PRWRKDYKRV  600
HAADNGFVDG ADRVQRFDQL YKGALGVVEE GAVSLDRYKV AMQVLEQSLD RVHSVEEKQE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587988.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587988.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A0D3CRC10.0A0A0D3CRC1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G7R60.0A0A3P6G7R6_BRAOL; Uncharacterized protein
STRINGBo6g039630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]