PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585849.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 679aa    MW: 77546 Da    PI: 7.4332
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.71e-1962155190
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     +fY+++Ak++GFs+r+++++ +    +  t+r fvC + g++  ++ ++ k +r+r ++r+gC+a l+++k +   + +w+vt + ++HnH+l 
  XP_013585849.1  62 DFYSTFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLSEGKPQRNRRSSRCGCQAYLRISKITelgSVEWRVTGFANHHNHDLL 155
                     6**************9998877356667999*************999999*********************9988889*************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-1662155IPR004330FAR1 DNA binding domain
PfamPF105513.2E-20278367IPR018289MULE transposase domain
PfamPF044341.8E-8553587IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.742556589IPR007527Zinc finger, SWIM-type
SMARTSM005759.2E-7564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MSDDAGQMLL IYDDPSDHRS LSLDDASSTE ESPDGTGLSL EAVNDVIPYI GQRFLTHDAA  60
YDFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLSE GKPQRNRRSS  120
RCGCQAYLRI SKITELGSVE WRVTGFANHH NHDLLEPSQV RFLPAYRSIS DADKSRILMF  180
SKTGITVQQM MRLMELEKCV EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE  240
QDPNFKFEFT LDANDKLENI AWSYASSIQA YEIFGDAVVF DTTHRLSAVE MPLGIWVGVN  300
NYGVPCFFGC VLLRDENVRS WSWALQAFTG FMSGKAPQTI LTDHNMCLKE AIDGEMPATK  360
HALCIWMVVG KFPSWFNAAL GERYNDWKAE FYRLYHLESI EEFELGWRDM VNSFGLHTNR  420
HINNLYASRS LWSLPYLRSH FLAGMTLSGR SKAINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQMEDG  540
YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQLPDRYLPL  600
RWRRISTSFS KTFRSNADDH GERVQFLQNL VSTLVSESSK SKERLEIATE QTSILLSRIR  660
EQPISSLSLR DISSVQRNF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585849.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585848.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_013585849.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A0D3C9000.0A0A0D3C900_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F1K90.0A0A3P6F1K9_BRAOL; Uncharacterized protein
STRINGBo5g010680.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]