PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585555.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 149aa    MW: 16174.4 Da    PI: 10.1924
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.1e-184377135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt+kTplWR gp g+k+LCnaCG++++kk++
  XP_013585555.1 43 CAICGTSKTPLWRGGPTGPKSLCNACGIRNKKKKS 77
                    999*****************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-143787IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.8223773IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.42E-133981No hitNo description
Gene3DG3DSA:3.30.50.102.0E-154176IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.35E-124291No hitNo description
PfamPF003204.8E-164376IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404368IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MLDHTEKIFD SEAMTTKFTS VDATEESSSS DGGGGTSSEK KSCAICGTSK TPLWRGGPTG  60
PKSLCNACGI RNKKKKSTVV RNRSDVKKKK NHATNPKLGD SLKKRLVELG REVMMQRSTA  120
EDKQRKKLGE EEQAAVLLMA LSYASSVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17389KKKSTVVRNRSDVKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585555.11e-106PREDICTED: GATA transcription factor 15
SwissprotQ8LG106e-79GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A0D3AF931e-105A0A0D3AF93_BRAOL; Uncharacterized protein
STRINGBo1g147740.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.16e-75GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]