PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584789.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 140aa    MW: 16189 Da    PI: 4.1335
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.79.1e-181099198
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    f+k ++++   + + l +p  f  e+     + + t+ l d  grsW++++  +k++++++lt GW++Fvk+n+L++g ++ F +d +++f  +v +
  XP_013584789.1 10 FIKPFISHK--SAKSLAIPLAFN-EYfPD--PLPNTVELLDYYGRSWTIRM--KKRGETVFLTVGWENFVKDNELEDGKMMEFIYDCDRTF--YVVI 97
                    667774444..44459******8.66243..4889****************..*******************************9987777..8888 PP

                    E- CS
              B3 97 fr 98
                    f 
  XP_013584789.1 98 FG 99
                    76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-205100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.7898101IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-219101IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-161098IPR003340B3 DNA binding domain
SMARTSM010192.2E-1710101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MAAPDEDQRF IKPFISHKSA KSLAIPLAFN EYFPDPLPNT VELLDYYGRS WTIRMKKRGE  60
TVFLTVGWEN FVKDNELEDG KMMEFIYDCD RTFYVVIFGH GGVSELRVFP QAVVDVGDYA  120
TGEEEGEEEE EEEEEKNKSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-5011003101At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584789.11e-100PREDICTED: B3 domain-containing protein At1g16640
SwissprotQ9FX773e-56Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLA0A0D3CAU31e-100A0A0D3CAU3_BRAOL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10014184e-56(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.12e-57B3 family protein