PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584671.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 193aa    MW: 20706.1 Da    PI: 7.444
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584671.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.8e-20553153
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                    +++kGVr+++ +g+WvAeIr+p        +r++lg+f taeeAa+a+++a+  +
  XP_013584671.1  5 KKFKGVRQRH-WGSWVAEIRHP-----LlkRRIWLGTFETAEEAARAYDEAAVLM 53
                    59*******9.**********8.....334*********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.09E-34565No hitNo description
PROSITE profilePS5103221.918663IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-32664IPR001471AP2/ERF domain
PfamPF008471.3E-12650IPR001471AP2/ERF domain
SMARTSM003801.0E-38669IPR001471AP2/ERF domain
PRINTSPR003673.9E-10718IPR001471AP2/ERF domain
PRINTSPR003673.9E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVQTKKFKGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT  60
NFPVNNTGDT SEGKTDISSS SSSSSSLSSI LSAKLRKCCK SPSPSLTCLR LDTASSHIGV  120
WQKRAGSKSD SSWVMTVELG PASSSQEPTK NASQDDVGPS TQVGGGGGGG EEGVMDEEEK  180
VALQMIEELL NTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-17569470ATERF1
3gcc_A8e-17569470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0052201e-135BT005220.1 Arabidopsis thaliana At1g15360 mRNA, complete cds.
GenBankAY3781011e-135AY378101.1 Arabidopsis thaliana transcription factor wax inducer 1 (WIN1) mRNA, complete cds.
GenBankAK1179411e-135AK117941.1 Arabidopsis thaliana At1g15360 mRNA for putative ethylene responsive element, complete cds, clone: RAFL19-13-G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584671.11e-140PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI331e-107WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0D3CAG51e-117A0A0D3CAG5_BRAOL; Uncharacterized protein
STRINGfgenesh2_kg.1__1687__AT1G15360.11e-107(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.14e-92ERF family protein