PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584552.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 392aa    MW: 43388.8 Da    PI: 7.7504
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.5e-11129152326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      e C+ f+r+G C++Gd C FaHg
  XP_013584552.1 129 GEVCPEFRRGGDCSRGDDCEFAHG 152
                     689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-6126156IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6126153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535126154IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8130152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-6130154IPR000571Zinc finger, CCCH-type
SMARTSM003562.5162185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDIVRPTVEI PPRKLLSSSK SFSGEASPRS SPRKHNWNNK SNKTSTSEQE EDSFNEDNTN  60
TNTNNNKDAK EYCYDSDTDD PYASDHFRMF EFKIRRCTRS RSHDWTDCPF AHPGEKARRR  120
DPRRFQYSGE VCPEFRRGGD CSRGDDCEFA HGVFECWLHP IRYRTEACKD GKHCKRKVCF  180
FAHSPRQLRV LPPENDSGGS SASTSQAKNQ NPCCLFCSGS PTSTLLGNLS HLSRSPSSSP  240
PLSPAHKAAA FSRLRSCAAS AAAAGSVNYK DVLNELVNSL DSITLAEALQ VSSPSPSPVS  300
AAAAAFASSC GLSTQRLHIQ QQQQSSPLQF ALSPSTPSYL TNSPRASFFS DDYTPRQREV  360
NEFTPSAVRE KTRFEDGSCG DPDIGWVNDL LT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584552.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA10.0C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0D3C7D90.0A0A0D3C7D9_BRAOL; Uncharacterized protein
STRINGBra015264.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-158C3H family protein