PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584066.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YC
Protein Properties Length: 188aa    MW: 21233.9 Da    PI: 9.2838
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC26.91.1e-08741701499
           NF-YC  14 tdfknhelPlarikkilkadedv.kmisaeaPvllskac..........elfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                     +d k  ++P+ ri++i+++d+   ++i  +a  l+ ka           elfi  ++  ++  + + k++ ++   ++++v++ + ++fl d vp
  XP_013584066.1  74 EDAKMIRFPMNRIRRIMRSDNSApQIIMQDAVFLVNKATvqyqplvywhELFIERFSEEAYGSSVKDKKKFIHYKHLSSVVSNEERYEFLADCVP 168
                     6788999*************987356788999999**96555555555589999999999**********************************9 PP

           NF-YC  98 rd 99 
                     ++
  XP_013584066.1 169 EK 170
                     86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.3E-1279168IPR009072Histone-fold
PfamPF008089.5E-1480154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.6E-1981169IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVSSKKPKSD GVNKGDGLNA RSSGSKSKKN SSNKAKLKEA AKKDAEVHEI SESSSSEGRR  60
DEPKESNGGV VVSEDAKMIR FPMNRIRRIM RSDNSAPQII MQDAVFLVNK ATVQYQPLVY  120
WHELFIERFS EEAYGSSVKD KKKFIHYKHL SSVVSNEERY EFLADCVPEK LKAEVALEEW  180
DRSMTDVG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7971470.0KC797147.1 Brassica napus transcription factor subunit NF-YC10B (NF-YC10B) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584066.11e-136PREDICTED: chromatin accessibility complex protein 1 isoform X1
TrEMBLA0A078E1301e-102A0A078E130_BRANA; BnaC05g05650D protein
STRINGBra018668.1-P1e-96(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111902231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-60nuclear factor Y, subunit C10