PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157025001
Common NameGSBRNA2T00157025001, LOC106442632
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 202aa    MW: 22305.9 Da    PI: 4.2886
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157025001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26069.76.5e-226107297
               DUF260   2 CaaCkvlrr.kCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqq 85 
                          C aC +  +  C+    + Cv+apyfp+++p kf  vh +FG++nv+k+l++l ++ +re a+++l+yeAear++dP++  +   + +++
  GSBRNA2T00157025001   6 CVACNFTDNgPCTlgngNACVMAPYFPSTEPDKFDRVHIVFGVENVCKILSRLeEPWQREYAANALCYEAEARIHDPIHDYLVPQMVYNN 95 
                          9999998876897444467**********************************55667*********************99999999999 PP

               DUF260  86 qleqlkaelall 97 
                           l++lk e++++
  GSBRNA2T00157025001  96 ILNNLKREIDSA 107
                          999999988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031956.9E-216106IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089114.6519111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDLPNCVACN FTDNGPCTLG NGNACVMAPY FPSTEPDKFD RVHIVFGVEN VCKILSRLEE  60
PWQREYAANA LCYEAEARIH DPIHDYLVPQ MVYNNILNNL KREIDSAINE LSITMAKVPQ  120
YSNLPIPSDF TKPSLFALIN EMLELNEDQK NQLRGLPDVD ARRNVDEIVG MRENDQGDVH  180
GADGASTSSG PSSGPPNQNQ P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-20611112111LOB family transfactor Ramosa2.1
5ly0_B2e-20611112111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157025001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013739748.11e-149LOB domain-containing protein 32
TrEMBLA0A0D3DFG21e-132A0A0D3DFG2_BRAOL; Uncharacterized protein
STRINGBo7g108100.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.12e-36LOB domain-containing protein 35
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]