PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153841001
Common NameGSBRNA2T00153841001, LOC106345289
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 151aa    MW: 17018.8 Da    PI: 6.2866
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153841001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.82e-1278137261
                          XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          ke +  +r+ +NR++A++ R+RKk ++   e ++ eL++ N++L +++++l +e   l++
  GSBRNA2T00153841001  78 KEYRSHKRLLRNRVSAQEARERKKVYVSDMESRANELQNNNDELEEKISTLMNENTMLRK 137
                          788899***********************************************9987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-1177141IPR004827Basic-leucine zipper domain
PfamPF001707.4E-1278137IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.18579142IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-1381139No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-1682140No hitNo description
CDDcd147048.84E-1484132No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010224Biological Processresponse to UV-B
GO:0080167Biological Processresponse to karrikin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSLQRPNGNS SSSSSPKKHK TEESDEEELL MVPDMEAAGS TCVLSSNADD GVNKPEIDQT  60
QNVTSTAKRG RGRDPVDKEY RSHKRLLRNR VSAQEARERK KVYVSDMESR ANELQNNNDE  120
LEEKISTLMN ENTMLRKMLI NTRPKADDNH *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in the blue light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevents the activation of light-induced genes. {ECO:0000269|PubMed:12023303}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153841001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145999.11e-106PREDICTED: transcription factor HY5-like isoform X1
RefseqXP_013639968.11e-106transcription factor HY5-like
SwissprotQ8W1912e-84HYH_ARATH; Transcription factor HY5-like
TrEMBLA0A3P5YZX11e-105A0A3P5YZX1_BRACM; Uncharacterized protein
STRINGBo5g122830.12e-93(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102661829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17609.25e-76HY5-homolog
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ciolfi A, et al.
    Dynamics of the shade-avoidance response in Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 331-53
    [PMID:23893169]
  3. Kreslavski VD, et al.
    Effect of preillumination with red light on photosynthetic parameters and oxidant-/antioxidant balance in Arabidopsis thaliana in response to UV-A.
    J. Photochem. Photobiol. B, Biol., 2013. 127: p. 229-36
    [PMID:24080425]
  4. Tossi V,Lamattina L,Jenkins GI,Cassia RO
    Ultraviolet-B-induced stomatal closure in Arabidopsis is regulated by the UV RESISTANCE LOCUS8 photoreceptor in a nitric oxide-dependent mechanism.
    Plant Physiol., 2014. 164(4): p. 2220-30
    [PMID:24586043]
  5. Tsai HL, et al.
    HUA ENHANCER1 is involved in posttranscriptional regulation of positive and negative regulators in Arabidopsis photomorphogenesis.
    Plant Cell, 2014. 26(7): p. 2858-72
    [PMID:25052717]
  6. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  7. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  8. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  9. Velanis CN,Herzyk P,Jenkins GI
    Regulation of transcription by the Arabidopsis UVR8 photoreceptor involves a specific histone modification.
    Plant Mol. Biol., 2016. 92(4-5): p. 425-443
    [PMID:27534420]
  10. Loyola R, et al.
    The photomorphogenic factors UV-B RECEPTOR 1, ELONGATED HYPOCOTYL 5, and HY5 HOMOLOGUE are part of the UV-B signalling pathway in grapevine and mediate flavonol accumulation in response to the environment.
    J. Exp. Bot., 2016. 67(18): p. 5429-5445
    [PMID:27543604]
  11. Feng XJ, et al.
    Light affects salt stress-induced transcriptional memory of P5CS1 in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(51): p. E8335-E8343
    [PMID:27930298]
  12. Li C, et al.
    Characterization and functional analysis of four HYH splicing variants in Arabidopsis hypocotyl elongation.
    Gene, 2017. 619: p. 44-49
    [PMID:28389360]
  13. Zhang Y, et al.
    Dissection of HY5/HYH expression in Arabidopsis reveals a root-autonomous HY5-mediated photomorphogenic pathway.
    PLoS ONE, 2017. 12(7): p. e0180449
    [PMID:28683099]
  14. Woloszynska M, et al.
    The Elongator complex regulates hypocotyl growth in darkness and during photomorphogenesis.
    J. Cell. Sci., 2019.
    [PMID:28720596]
  15. Serivichyaswat PT,Susila H,Ahn JH
    Elongated Hypocotyl 5-Homolog (HYH) Negatively Regulates Expression of the Ambient Temperature-Responsive MicroRNA Gene MIR169.
    Front Plant Sci, 2017. 8: p. 2087
    [PMID:29270188]
  16. Yang B, et al.
    RSM1, an Arabidopsis MYB protein, interacts with HY5/HYH to modulate seed germination and seedling development in response to abscisic acid and salinity.
    PLoS Genet., 2018. 14(12): p. e1007839
    [PMID:30566447]