PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153041001
Common NameGSBRNA2T00153041001, LOC106381002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 289aa    MW: 30999.5 Da    PI: 6.1478
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153041001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.51.7e-36521493103
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                          + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++++a ++    +   +  ++s +  +
  GSBRNA2T00153041001  52 APKRPSKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTIPAIAVsV--NGALKIPTDSTP--Q 137
                          5699***********************************************************9999955421..222222222222..1 PP

                  TCP  92 ksaakskksqks 103
                           ++  ++ ++++
  GSBRNA2T00153041001 138 FESDGGSGKRRR 149
                          222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.77657111IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-2957133IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGSNLEGKEA MAHLSDPDPE TNRGMLLKEE DDDPKKQQEV GFLQPMTSSV TAPKRPSKDR  60
HTKVEGRGRR IRMPAGCAAR IFQLTRELGH KSDGETIRWL LERSEPAIIE ATGTGTIPAI  120
AVSVNGALKI PTDSTPQFES DGGSGKRRRR NCTSEFVDIN RQDSSVTSGL APITASSYGV  180
NLMNVNAQNF VPFWQTGFVT GGPNQMGHMW AIPTVAAPSF LNGGTTRPVP SYVSNTSEAE  240
PQMGTSGGGD DGTTQTLRDF SLETYDKKEL QFLGCSGDNT SPSSCRGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.154901e-138flower| seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153041001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614476.10.0PREDICTED: transcription factor TCP19
RefseqXP_013676320.10.0transcription factor TCP19
RefseqXP_022551734.10.0transcription factor TCP19
SwissprotQ9LT891e-123TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A0D2ZSV20.0A0A0D2ZSV2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D4A50.0A0A3P6D4A5_BRAOL; Uncharacterized protein
STRINGBo00998s020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-118TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]