PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00152654001
Common NameGSBRNA2T00152654001, LOC106394985, LOC106394989
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 181aa    MW: 20444.4 Da    PI: 9.638
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00152654001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294870123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k+Fs+   L  H  +H
  GSBRNA2T00152654001 48 FECKTCNKRFSSFQALGGHRASH 70
                         89**********99999998887 PP

2zf-C2H216.52.4e-0595117123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg+sF +   L  H+r+H
  GSBRNA2T00152654001  95 HECSICGQSFGTGQALGGHMRRH 117
                          78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-124772IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-847117No hitNo description
SMARTSM003550.0934870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5334875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PfamPF139127.5E-1295119IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.51295122IPR007087Zinc finger, C2H2
SMARTSM003550.009795117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKRERSEFEE SIKMSDDIAR CLMILSQTSM VKQVDVNQYT DRDTSNRFEC KTCNKRFSSF  60
QALGGHRASH KKPKLSVDQK EVKHVTNNYN GTHMHECSIC GQSFGTGQAL GGHMRRHRSS  120
MKVEPSQLIS PVISNVPVLK RCSSSKRVLS LDLNLTPLEN DLETIFGKTF FPNIDMKFAV  180
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00152654001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690976.11e-133zinc finger protein ZAT11-like
RefseqXP_013690983.11e-133zinc finger protein ZAT11-like
SwissprotQ9SLD41e-102ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A3P6CDI71e-131A0A3P6CDI7_BRAOL; Uncharacterized protein
STRINGBo4g030570.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]