PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149695001
Common NameGSBRNA2T00149695001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 234aa    MW: 26420.7 Da    PI: 7.0618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149695001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-2053102255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+fgtaeeAa a+++a+ +++g
  GSBRNA2T00149695001  53 LYRGVRQRH-WGKWVAEIRLPKS---RTRLWLGTFGTAEEAALAYDQAAFQIRG 102
                          59******9.**********954...4***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-3252111No hitNo description
SMARTSM003801.5E-3553116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-3153111IPR001471AP2/ERF domain
PROSITE profilePS5103222.22153110IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2153111IPR016177DNA-binding domain
PRINTSPR003676.4E-115465IPR001471AP2/ERF domain
PfamPF008476.7E-1554102IPR001471AP2/ERF domain
PRINTSPR003676.4E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MESKPLGLNQ LTPYQTYQIQ KQLNHRRSTT STLSPNQILM KKLSPSSSNS QKLYRGVRQR  60
HWGKWVAEIR LPKSRTRLWL GTFGTAEEAA LAYDQAAFQI RGDIGKLNFP DIKHEEINSL  120
PSSVDAKLQA ICHSLRKTEE TCSVSDKTAD ISSVSKLFLI KTEHMEMKFS DDSPRNDKNS  180
SWDESKLESS SSEQGITFLE FSDSELDEIG RFGLVKFPSV EIDWDAISKL SES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2152110160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149695001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635195.11e-160PREDICTED: ethylene-responsive transcription factor ERF056
SwissprotQ9SIE41e-115ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLA0A0D3C1481e-159A0A0D3C148_BRAOL; Uncharacterized protein
STRINGBo4g149390.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-101ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]