PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00148012001
Common NameGSBRNA2T00148012001, LOC106390061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 308aa    MW: 32896.6 Da    PI: 8.4755
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00148012001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822191.82.5e-5921361133
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasas 89 
                          ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkgs+++ e++e+++ sa++s
  GSBRNA2T00148012001   2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEQDGTTYRKGSSRPvERMEIGVGSATTS 91 
                          5899*********************************************************************9999************* PP

               DUF822  90 pesslqsslkssalaspvesysas.pksssfpspssldsislasa 133
                          p++s++ s++ss++ sp  +  +s   +s +p  ++l+++s++sa
  GSBRNA2T00148012001  92 PCASYNPSPVSSNFMSPSYANLTSgDGQSLIPWLKHLSTTSSSSA 136
                          ******999999999997554444145566666666666655554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.0E-533133IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG  60
WIVEQDGTTY RKGSSRPVER MEIGVGSATT SPCASYNPSP VSSNFMSPSY ANLTSGDGQS  120
LIPWLKHLST TSSSSASSSS RLPSFMYLPG GSISAPVTPP LSSPTARGMN QINNSFFVSS  180
TPPSPTRQQT VPGSEWFAGI QLAQSVPASP TFSLVSRNPF GFREDQLASA GGGGGSRMWT  240
PGQSGTCSPA IPQTGDVPMS EAVAPPEFAF GSNANGLVKA WEGERIHEES GSDDLELTLG  300
NSSTRCN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.225979e-72root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00148012001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013685899.10.0PREDICTED: BES1/BZR1 homolog protein 4-like
RefseqXP_013590172.10.0PREDICTED: BES1/BZR1 homolog protein 4
SwissprotQ9ZV881e-162BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A078DGR30.0A0A078DGR3_BRANA; BnaC06g39100D protein
TrEMBLA0A0D3D1M40.0A0A0D3D1M4_BRAOL; Uncharacterized protein
STRINGBra035060.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19172781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-154BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]