PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147414001
Common NameGSBRNA2T00147414001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 254aa    MW: 27334.4 Da    PI: 10.1044
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147414001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.17.6e-39402163120
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 
                          +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ +++    
  GSBRNA2T00147414001  40 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSVRGSSTTIStstn 128
                          79*************************************************************99999777.233333333223334566 PP

                  TCP  89 .......................................................kaaksaa.kskksqksaasalnlakesrakara 120
                                                                                 +++ + + +++++q++aa+al ++++++++a +
  GSBRNA2T00147414001 129 ctlsssldhkpfilgkrlredsgggkdemgsfatpagfwavparpdfgqvwsfasHQEMFLQqQQQQQQQPAAAALFVHQQQQQQAAM 216
                          777788888899999999999999999*************************998555555525555555555555555555555443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3545205IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8924599IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSNNNNDDGV MISNGSLIEH QRQQQQQQNL KQSSDGGLVV KKPPAKDRHS KVDGRGRRIR  60
MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TASVSVRGSS  120
TTISTSTNCT LSSSLDHKPF ILGKRLREDS GGGKDEMGSF ATPAGFWAVP ARPDFGQVWS  180
FASHQEMFLQ QQQQQQQQPA AAALFVHQQQ QQQAAMGEAS AARVGNYLPG HLNLLASLSG  240
GAPGSGRRED DQR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147414001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076482e-40AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
GenBankAK1186792e-40AK118679.1 Arabidopsis thaliana At5g23280 mRNA for unknown protein, complete cds, clone: RAFL19-95-A03.
GenBankCP0026882e-40CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736882.11e-154transcription factor TCP7
SwissprotQ9FMX21e-107TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A3P5YJI40.0A0A3P5YJI4_BRACM; Uncharacterized protein
STRINGBo7g097790.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-59TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]