PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146482001
Common NameGSBRNA2T00146482001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 445aa    MW: 51065.9 Da    PI: 7.7385
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146482001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.5e-11165207450
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                          +k  rr+++NReAAr+sR+RKka++++Lee   +L++  ++L    e
  GSBRNA2T00146482001 165 DKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQEL----E 207
                          6899**************************888888777544....3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-5157220IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.381164208IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-8164209No hitNo description
PfamPF001701.9E-7165206IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.29E-6166208No hitNo description
PROSITE patternPS000360169184IPR004827Basic-leucine zipper domain
PfamPF141443.4E-30248322IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLHSVLSSLR KKWSKNTLWK SHTSGLWALQ EFLVADIIWC VLHRYKRTIM SPFGSVKKAL  60
ISKQNKEEMM SSFSPTQLAS LRDMGIYEPF QQLVSWGNVY KSDINDHSPN TASSSVIQVD  120
ARVDDHNNIV KSNYNSSHNQ IEAEPCSNDH QDVDDDDDDD GRIHDKMKRR LAQNREAARK  180
SRLRKKAYVQ QLEESRLKLS QLEQELERAK QQGLRVSNSI PSGSITNTRI ATFEMEHSHW  240
LEEQSRRISE LRIALQAHIS DIELRMLVES CLNHYANLFR MKSDAAKADV FYLISGMWRT  300
CTERFFQWIG GFRPSELLNV VMPYLQPLTD QQVLEVRNLQ QSSQQAEDAL SQGIEKLQQS  360
LVENIVVDAF SMDYPPQMAA ALENLQALEG FVNQADHLRQ QTLQQMAKIL TTRQSARGLL  420
ALGEYLHRLR ALSSLWAARP REPT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.218281e-153leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146482001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696054.10.0transcription factor TGA7-like
SwissprotQ93ZE20.0TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A3P6H3T00.0A0A3P6H3T0_BRAOL; Uncharacterized protein
STRINGBo6g121590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.10.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]