PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146428001
Common NameGSBRNA2T00146428001, LOC106354688
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 293aa    MW: 31902.5 Da    PI: 6.0724
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146428001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.7e-06447542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ +e  e+   C  ++  lC +C ++ H        H++vpl
  GSBRNA2T00146428001  4 QCNVCEAAEAAVLCCADEAALCWSCDEKVHAAnklagkHQRVPL 47
                         7******99*********************66899999999986 PP

2zf-B_box25.33.1e-085490337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                          +kC+ ++e    +fC +++ llC++C +++H     H
  GSBRNA2T00146428001 54 IPKCDICQEASGFFFCLQDRALLCRKCDVAIH-TvnpH 90
                         689*******9********************9.33452 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.438147IPR000315B-box-type zinc finger
CDDcd000213.04E-7347No hitNo description
SMARTSM003363.8E-10447IPR000315B-box-type zinc finger
SMARTSM003363.8E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.7595299IPR000315B-box-type zinc finger
CDDcd000212.85E-85599No hitNo description
PfamPF006433.8E-65589IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKIQCNVCEA AEAAVLCCAD EAALCWSCDE KVHAANKLAG KHQRVPLSVS SSSIPKCDIC  60
QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT GIRVGLECTD TDPSSKPSPS  120
NDDKTNEAKQ VTLPTSEPQK MDFDHHKVVL PETNVSDHIS TKLPYASSGS ATGSIPQWQI  180
EEIFRLTDFD QSYEYMEING SSKADTSRLG DSDSSSMMRS GGEEDGEDNS NCLGGETSWA  240
VPQIHSPPTA SGLNWPKHFN HHSAVFVPDI SSSTPYTGSS PNPRVGKRRR RF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.190870.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146428001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526340.0AK352634.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106574.10.0PREDICTED: probable salt tolerance-like protein At1g78600
RefseqXP_013650145.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM21e-168BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A078DJL70.0A0A078DJL7_BRANA; BnaA07g34250D protein
TrEMBLM4F1V40.0M4F1V4_BRARP; Uncharacterized protein
STRINGBra035051.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-134light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]