PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146114001
Common NameGSBRNA2T00146114001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 219aa    MW: 25454.7 Da    PI: 8.5453
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146114001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.82.3e-1382131352
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                          + +r+rr  +NRe+ArrsR RKk++ieeL++ v++L   N+ L +++ +l
  GSBRNA2T00146114001  82 DERRARRVVSNRESARRSRMRKKKQIEELQQQVEQLMVLNHNLSEKVINL 131
                          6689****************************************997665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-1480144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.11682145IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-1084136No hitNo description
PfamPF001707.1E-1284142IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.9E-1184140No hitNo description
CDDcd147022.62E-1585136No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MIRHLKPNME SSPHRSHHCF DILEGMPPQN DNFNSTFLQN PNFHVHLQSI SPDLSTRSNN  60
NRSDHLDPNG EPFCHREGLD PDERRARRVV SNRESARRSR MRKKKQIEEL QQQVEQLMVL  120
NHNLSEKVIN LLESNHQIIQ ENSHLKEKVS SFHLLMAEML IPMRNVDGSI NERDVNHLRG  180
ETSNRTNTFF GSFLIKALYI DIRVCIETRA THQKVLAN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.109180.0microspore-derived embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146114001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610743.11e-137PREDICTED: basic leucine zipper 43-like
RefseqXP_013654644.21e-137basic leucine zipper 43-like
TrEMBLA0A3P6DB271e-152A0A3P6DB27_BRAOL; Uncharacterized protein
STRINGBo9g014350.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.16e-71basic leucine-zipper 70
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]