PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146105001
Common NameGSBRNA2T00146105001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 216aa    MW: 22982.6 Da    PI: 9.8674
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146105001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.84.5e-39111753118
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnss 86 
                          +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++              +++ +
  GSBRNA2T00146105001  11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvsaslR-------GNSTT 93 
                          79*************************************************************999996664332221.......22111 PP

                  TCP  87 sg..................................................kaaksaakskksqksaasalnlak.esraka 118
                           +                                                  + a++++  +++q++aa  l +++ +++++a
  GSBRNA2T00146105001  94 TScnssssldhkpllgsspfilgkrvradedtssgfwavparpefgqvwsfaAGATQEMFLQQQQQQAA-GLFVHHqQQQQQA 175
                          112233446677788888999999999999999999999999999999998644444444444444444.3444441333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-3516173IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8921670IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL  60
RQAEPSIIAA TGTGTTPASF STVSASLRGN STTTSCNSSS SLDHKPLLGS SPFILGKRVR  120
ADEDTSSGFW AVPARPEFGQ VWSFAAGATQ EMFLQQQQQQ AAGLFVHHQQ QQQQAAMGEA  180
SAARVGNYLP GHLNLLASLS SGAPGSGRGE DDDQR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.139570.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146105001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606593.11e-143PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX21e-104TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A3P6DB091e-157A0A3P6DB09_BRAOL; Uncharacterized protein
STRINGBo9g014260.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-76TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]