PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143241001
Common NameGSBRNA2T00143241001, LOC106364602, LOC106390409
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 189aa    MW: 21921.1 Da    PI: 6.3941
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143241001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.76.1e-1473129460
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                          ++++rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++L ++l++ ++  + + 
  GSBRNA2T00143241001  73 DRKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENQQLLDKLNQASDSNDLVL 129
                          689*******************************************99888776555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-1270134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.54272120IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.5E-1173125No hitNo description
PfamPF001706.0E-1273131IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-1374123No hitNo description
CDDcd147021.08E-1875122No hitNo description
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MQPNYDSSSL NSMQQQDYFH LNHYYNNLNP STNINNLNLI PYPQIHQEFN LQSPGNNSTT  60
SDEATEDIFV INDRKQRRMV SNRESARRSR MRKQRHLDEL LSQVAWLRSE NQQLLDKLNQ  120
ASDSNDLVLQ ENLRLKEENV ELRQVITSMK KLGGSTSIQG RYCSSSLDHE LDQDFSCITN  180
DPRTHHPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18693RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143241001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400870.0AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126070.11e-136PREDICTED: basic leucine zipper 43-like
RefseqXP_013659596.11e-136basic leucine zipper 43-like
SwissprotQ9FMC24e-30BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A3P5ZWT71e-135A0A3P5ZWT7_BRACM; Uncharacterized protein
TrEMBLM4E4371e-135M4E437_BRARP; Uncharacterized protein
STRINGBra023540.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.12e-90basic leucine-zipper 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]