PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142959001
Common NameGSBRNA2T00142959001, LOC106409547
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 173aa    MW: 20085.2 Da    PI: 5.6613
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142959001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.61.7e-1580138563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          +++rr+++NRe+ArrsR RK+  ++eL   v  L  eN++L ++l++l++  +k+ +e+
  GSBRNA2T00142959001  80 RKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHEKVLQEN 138
                          689***************************************************99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-1476140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-1178133No hitNo description
PROSITE profilePS5021710.93278141IPR004827Basic-leucine zipper domain
PfamPF001706.4E-1480138IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.13E-1380130No hitNo description
CDDcd147022.91E-1981131No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQPQTDVFSL QNYLNSSIPS PYPSHFQISS PFPINGQNPN SFYGFQNATN NPQSMGLSSN  60
NSTSDEAEEQ QTDKNIINER KQRRMISNRE SARRSRMRKQ RHLDELWSQV MWLRIENHQL  120
LDKLNNLSES HEKVLQENAQ LKEETSDLKQ VISDMQIQSP FSCFRDDIIP IE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142959001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168781e-176AB016878.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP15.
GenBankCP0026861e-176CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596330.11e-124PREDICTED: basic leucine zipper 43-like
RefseqXP_013705617.11e-124basic leucine zipper 43
SwissprotQ9FMC25e-67BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D3DBM21e-122A0A0D3DBM2_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RQE21e-122A0A3N6RQE2_BRACR; Uncharacterized protein
TrEMBLA0A3P6E3X01e-122A0A3P6E3X0_BRAOL; Uncharacterized protein
STRINGBo7g088760.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-110basic leucine-zipper 42
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]