PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141844001
Common NameGSBRNA2T00141844001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 672aa    MW: 73414.4 Da    PI: 7.1107
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141844001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093924291954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  GSBRNA2T00141844001 392 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 429
                          554459******************************88 PP

2BELL123.58.7e-40251322172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi
  GSBRNA2T00141844001 251 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 322
                          79*********************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-76171320IPR006563POX domain
PfamPF075263.0E-46177319IPR006563POX domain
PROSITE profilePS5007112.26370433IPR001356Homeobox domain
CDDcd000861.12E-12373434No hitNo description
SMARTSM003892.3E-9373437IPR001356Homeobox domain
SuperFamilySSF466895.99E-17374440IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-29376439IPR009057Homeodomain-like
PfamPF059202.8E-18390429IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MAAYFHGNPP EISAGTDGGL QTLILMNPTT YVPYTQQDDD SNNSNNNNNN TNNNNFVFLD  60
SRAPPQNANQ QFVGIPLSGH EAASITAADN ISVLHGYPPR VQYSLYGSHH VDPTHHQAAC  120
ETPRAQRGLS LTLSSQQQQQ QHRQTLHHVG FGSGPGEDIR VGSGSTASGV TNGVANLVSS  180
KYLKAAQELL DEVVKADSND INTKSQLFSS KKGTSVTDTK AVGESSTGAR EGSDGGGEAS  240
GKRTVELGTA ERQEIQMKKA KLSSMLHEVE QRYRQYHQQM QMVISSFEQA AGIGSAKSYT  300
SLALKTISRQ FRCLKEAIAG QIKAANKSLG EEDSVSGVGR FEGSRLKFVD HHLRQQRALQ  360
QLGMIQHPSN NAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS  420
NWFINARVRL WKPMVEEMYA EEMKEQGKNM GSMEKTPNLD ENIDDSASKS TSNQEKIPMG  480
GGGLDNYHLN PSHNGDVEGV TGMQESPKRL RTSDGTMMQP INEGFSLNEK MKILEERQGI  540
RSDGGYPFMV SFGQYQMDEM SRFNVAVSDQ ELLTQRFSGN NNGVSLTLGL PHCDSLSSTH  600
HQGFMQTHHG IQIGRSVKIG ETEEYGNSAI NGGSGSTATA HSSAAAAAAY NGMNIQNQKR  660
YVAQLLPDFV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-17379436158Homeobox protein Meis1
4xrs_B9e-17379436158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.45240.0flower| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141844001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013683591.10.0BEL1-like homeodomain protein 1
RefseqXP_022554766.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A397ZVY60.0A0A397ZVY6_BRACM; Uncharacterized protein
STRINGBo3g029830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50082650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.30.0BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]