PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141197001
Common NameGSBRNA2T00141197001, LOC106445598
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 483aa    MW: 52511.6 Da    PI: 4.7007
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141197001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.24.3e-26160225171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++++++g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek  kn+i wkg
  GSBRNA2T00141197001 160 RYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIDLIEKPLKNRILWKG 225
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-28156227IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.9E-32160225IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-16160223IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.6E-23162225IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.46E-48238342No hitNo description
SuperFamilySSF1440748.89E-33238342No hitNo description
PfamPF164216.1E-33242340IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSGGVRSSPG SSRQPPPPPQ HPAASVPVVP PIRRHLAFAS TKPPFHPSDN YHRFTPSHLA  60
NNLVNGCGGL VDREEDAVVL RSPSRKRKST MDVVTTTTTS TSNGFTSSDG FTSSPCRTPV  120
SAKGDRVNIK SKAKGNQSIP QTPISNIGSP ATLTPSGSCR YDSSLGLLTK KFVNLIKQAK  180
DGMLDLNKAA ETLEVQKRRI YDITNVLEGI DLIEKPLKNR ILWKGVDALR PGDVDADVSD  240
VQAEIENLSL EEQALDNQIR ETEQRLRDLS ENEKNQKWLF VTEEDIKSLP GFQNQTLIAV  300
KAPHGTTLEV PDPDEAVGHP QRRYRIILRS TMGPIDVYLV SEFEEKFEDT NGPAAPPPPP  360
PCLPIASCSG STENHNIEAL TVDNTGTAVE DQLSQTHANA QPGETSDLNY LEEQVGGMLK  420
ITPSEVENDD TDYWLLSNAD ISMTDIWKTD SGIDWDYGIA DVSTPPPIIG DISPTAIDSI  480
PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-23155226274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141197001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9429840.0JN942984.1 Brassica juncea E2F transcription factor (E2Fa) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013742633.10.0PREDICTED: transcription factor E2FA-like isoform X1
SwissprotQ9FNY00.0E2FA_ARATH; Transcription factor E2FA
TrEMBLA0A078D7080.0A0A078D708_BRANA; BnaC04g09260D protein
STRINGBra005305.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.10.0E2F transcription factor 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]