PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140381001
Common NameGSBRNA2T00140381001, LOC106418517, LOC106431428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 262aa    MW: 29749.7 Da    PI: 9.4145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140381001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00166791223
                         EET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  2 kCp..dCgksFsrksnLkrHirt.H 23
                         +Cp   C+++ ++ +n++ H +t H
  GSBRNA2T00140381001 67 SCPivGCPERLKSLDNFEDHYKTrH 91
                         69999*****************999 PP

2zf-C2H214.78.6e-0594116223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ C+++++++ +L  Hi+  H
  GSBRNA2T00140381001  94 SCSVCSRVYPTSRLLSIHISEaH 116
                          6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0796691IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806891IPR007087Zinc finger, C2H2
SMARTSM00355593116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095116IPR007087Zinc finger, C2H2
SMARTSM003550.069131156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAMGMAVGEL GFPYWNPLRR RFPPDSPFFA SGNVERELLA KQVALDFTED EITNLQTIVE  60
TESRRISCPI VGCPERLKSL DNFEDHYKTR HTASCSVCSR VYPTSRLLSI HISEAHDSFF  120
QAKVARGYDM YECLVEGCGL KFKSYKARHR HLIDKHKFPT TFEFFKRTQL SKKRREKLQR  180
QRVPKLKHEE DKEEASSDAM EVEDKASLDG LVSALSTLTT SDTTPSNVSF GRRHGRGLTF  240
VPRSVHREKP TNSSSTPGSK T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176KKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.59850.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140381001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013714693.10.0zinc finger protein 511-like
RefseqXP_013727685.10.0zinc finger protein 511-like
TrEMBLA0A0D3B1320.0A0A0D3B132_BRAOL; Uncharacterized protein
STRINGBo3g009650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-166zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]