PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00137506001
Common NameGSBRNA2T00137506001, LOC106444057
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 301aa    MW: 34808.2 Da    PI: 10.2713
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00137506001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-1819111197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk++ ++d +++++  +p +f++++ +k+  s +++++ ++g sWev +  + +++  y+ ++GW++Fv +n L e++fv+F+++g ++
  GSBRNA2T00137506001  19 FFKIFQSADLFSESMRAMPYNFMKNI-SKEDFSYKMVIRAQWGSSWEVDI--SMNPRFyYMEKSGWNQFVTDNALGENEFVTFTHKGLMR 105
                          99*********************777.466799*****************..999999566669********************988799 PP

                          E..EEEEE CS
                   B3  90 felvvkvf 97 
                          f  +v ++
  GSBRNA2T00137506001 106 F--NVNIY 111
                          8..66665 PP

2B334.73.2e-11207288993
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           ++ ++ l +pkkf e++  +  esk  ++ +++g  sWev +    +  r+++++GW + +++  L +gD + F+l++ +ef l+
  GSBRNA2T00137506001 207 TNSYLKFLAIPKKFEEAYIPD--ESKVYMIHHSEGkGSWEVLC--LVRETRTIFSSGWCRLAREYPLSVGDRCSFHLVKPDEFVLT 288
                          334445699*****9999433..44344444444449******..8888889*************************998888555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-1713115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1714119IPR015300DNA-binding pseudobarrel domain
CDDcd100177.48E-1518111No hitNo description
SMARTSM010198.8E-2119114IPR003340B3 DNA binding domain
PROSITE profilePS5086313.0719114IPR003340B3 DNA binding domain
PfamPF023627.5E-1719110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-14197288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-16197288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.814199293IPR003340B3 DNA binding domain
CDDcd100172.80E-10200283No hitNo description
SMARTSM010194.8E-11202293IPR003340B3 DNA binding domain
PfamPF023624.3E-9204290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGWNRGFGRV KDERKNLSFF KIFQSADLFS ESMRAMPYNF MKNISKEDFS YKMVIRAQWG  60
SSWEVDISMN PRFYYMEKSG WNQFVTDNAL GENEFVTFTH KGLMRFNVNI YGKNGKEIVT  120
PRKPHTTTPF SGIKKEEDVK KEDESMGGGV EIEVEKKKRA VEIGESSRGA ALKKKKAEKP  180
KLSKKKKKKI KRNKAKNGVP EFKITITNSY LKFLAIPKKF EEAYIPDESK VYMIHHSEGK  240
GSWEVLCLVR ETRTIFSSGW CRLAREYPLS VGDRCSFHLV KPDEFVLTTK KAREEITVIE  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173188KKKAEKPKLSKKKKKK
2183191KKKKKKIKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00137506001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741041.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-108Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A078D2B30.0A0A078D2B3_BRANA; BnaA03g34370D protein
STRINGBra001648.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.13e-99B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]