PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00137332001
Common NameGSBRNA2T00137332001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 439aa    MW: 47730.5 Da    PI: 6.9085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00137332001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000753273661054
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + R +++ ++++ L++l+ +      +K + a++L +A+eY k L
  GSBRNA2T00137332001 327 KVRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYTKFL 366
                          56889999***********98.....8**************8877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.074317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.16E-4327371No hitNo description
Gene3DG3DSA:4.10.280.101.8E-8327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-10327381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS STSSSMRASS IVSGGSDVFD EKLHSSLATD HHLQMIGLGL  60
SSQSPVDQWN QPLLRGDSKA ETSFGAMLQE NLNLDATSNA NAIQESDSSN HQALWRDTQI  120
NNSDFKPQLN MTSSNRGFFL EHQFSPHGSS STDSSTVTCQ GFAVDNSLYG TATTPSSSSA  180
MFHQGAGFNL PGSSDQQPLR NHQQRNLGYG NYDQLASTWF SRSSPPKPNS PLRFSNNATF  240
WNPAATAGNV GPTHHDASSN FFPALRPPQI HAPSFDKQKA SICFLYIYHD ITKVPDSKSN  300
EVKRGGADQP AAKRAKSEAP SPSPASKVRK EKMGDRIAAL QQLVSPFGKT DAASVLSEAI  360
EYTKFLHQQV SALSNPYMKS GASLQHQQMS DHHKELEVSE EPDLRSRGLC LVPVSSIFPV  420
TQDTTVDFWT PTFGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00137332001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0085801e-151BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
GenBankAK1180541e-151AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720626.10.0PREDICTED: transcription factor bHLH123-like
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A078CZF50.0A0A078CZF5_BRANA; BnaA03g35890D protein
STRINGBra001798.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]