PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136998001
Common NameGSBRNA2T00136998001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 188aa    MW: 20472.9 Da    PI: 6.217
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136998001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.2e-06433534
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                          C+ +e+  ++ fC  ++  lC +C ++ H
  GSBRNA2T00136998001  4 LCDVCESAAAIVFCAADEAALCCSCDEKVH 33
                         6**************************998 PP

2zf-B_box284.7e-095292238
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                         +++ C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  GSBRNA2T00136998001 52 NAPSCDICENAPAFFYCEIDGTSLCLQCDMVVHVGgkrtHR 92
                         7899*****************************66666776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.068147IPR000315B-box-type zinc finger
CDDcd000211.73E-5345No hitNo description
SMARTSM003366.7E-6447IPR000315B-box-type zinc finger
SMARTSM003369.9E-145196IPR000315B-box-type zinc finger
PROSITE profilePS501199.3715196IPR000315B-box-type zinc finger
PfamPF006432.9E-75292IPR000315B-box-type zinc finger
CDDcd000211.63E-85496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MRILCDVCES AAAIVFCAAD EAALCCSCDE KVHMCNKLAS RHVRVGLADP SNAPSCDICE  60
NAPAFFYCEI DGTSLCLQCD MVVHVGGKRT HRRFLLLRQR IEFPGDKPNH ADDLGLRCQE  120
ANRQKVSSSG RGQESNGNGD HNMIDLNSNP QRVHEPGSNH QEQGIDVNST NNHEPVGVVP  180
VGTFKRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.138230.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136998001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605174.11e-137PREDICTED: B-box zinc finger protein 18 isoform X1
RefseqXP_013711437.11e-137PREDICTED: B-box zinc finger protein 18 isoform X1
SwissprotQ9SJU51e-112BBX18_ARATH; B-box zinc finger protein 18
TrEMBLA0A078D4401e-137A0A078D440_BRANA; BnaC08g35830D protein
STRINGBra031180.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.11e-113DBB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]