PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136327001
Common NameGSBRNA2T00136327001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 130aa    MW: 14819.6 Da    PI: 6.8064
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136327001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-1191128340
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                          +W++ E++l++ + k++G+g+W++I+r +  +Rt+ q+
  GSBRNA2T00136327001  91 PWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQV 128
                          8**********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.976155IPR017930Myb domain
SMARTSM007176.4E-7253IPR001005SANT/Myb domain
SuperFamilySSF466894.58E-12459IPR009057Homeodomain-like
CDDcd001673.73E-5651No hitNo description
PROSITE profilePS5129415.35984129IPR017930Myb domain
SuperFamilySSF466897.18E-985128IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-887129IPR006447Myb domain, plants
SMARTSM007170.2588129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-990128IPR009057Homeodomain-like
PfamPF002492.0E-991128IPR001005SANT/Myb domain
CDDcd001677.80E-891128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAASQWTRSE DKMFEHALVL FPEGSPNRWE IIADQLQKSA GEVREHYEAL VHDVIEIDSG  60
RVHVPRYMDD SAGQISFESK HGENERKRGT PWSESEHKLF LVGLKRYGKG DWRSISRNVV  120
VTRTPTQVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136327001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122571.18e-91PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-40DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A078C1T11e-92A0A078C1T1_BRANA; BnaA10g25530D protein
STRINGBra009432.1-P2e-90(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.15e-77MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]