PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135251001
Common NameGSBRNA2T00135251001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 339aa    MW: 38278.9 Da    PI: 8.6054
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135251001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1371.6e-421042273133
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 
                          +k+drhski+T+ g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k++ik+  ++ + +as    ++++ ++s     ++ +
  GSBRNA2T00135251001 104 KKRDRHSKICTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLISKSKASIKQVKESAAAAAS---GNHEHLQVS-----DNVN 185
                          699************************************************************777772...233333333.....2222 PP

                  TCP  93 saa.kskksqksaasalnlakesrakarararertrekmrik 133
                          +++ k +k +++    + ++kesr+kar+rarert  km+++
  GSBRNA2T00135251001 186 DKTqKVSKGRTKRVDDSCKKKESREKARERARERTMTKMKMR 227
                          222244444444444467888*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-34104176IPR005333Transcription factor, TCP
PROSITE profilePS5136934.922105163IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.195206223IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MFPSIDTNGH DLFDPFNLHE ATMFPSFTTH ILSPSSHHHY PFPSFPSSSD FLDESVLISQ  60
FLLQQQANVD SPRKLCKELE QEKKNEEWVD GTTSEKVSPR RTGKKRDRHS KICTAHGPRD  120
RRMRLSLQIA RKFFDLQDML GFDKASKTIE WLISKSKASI KQVKESAAAA ASGNHEHLQV  180
SDNVNDKTQK VSKGRTKRVD DSCKKKESRE KARERARERT MTKMKMRLSG PIDTSKTFAD  240
PNQESRKTKI TGGAQVEGEN LEQERSIIEK FLGLTSESSS STIFGDSEES YTSLGSIRET  300
VSTGGMVIPR EHNTTLTASV DEERNPISTF SLYDYLCY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}.
UniprotTISSUE SPECIFICITY: Expressed in axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135251001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651399.10.0transcription factor TCP12-like
SwissprotA0AQW41e-134TCP12_ARATH; Transcription factor TCP12
TrEMBLA0A0D3AP240.0A0A0D3AP24_BRAOL; Uncharacterized protein
STRINGBo2g061250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-125TCP domain protein 12
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]