PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134763001
Common NameGSBRNA2T00134763001, LOC106414555
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 239aa    MW: 26041.6 Da    PI: 7.247
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134763001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.72e-292103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr +C++ C+l+p++     +++q +++ +v+k+FG++ +++l++a+pe +r+++++sl++eA+ r+ +Pv+Gavg+++++++
  GSBRNA2T00134763001   2 SCNGCRVLRIGCSETCILRPCLqwiesAESQGHATVFVAKFFGRASLMSLISAAPEPNRPALFQSLLFEACGRTVNPVNGAVGMLWTVNW 91 
                          6*********************9999777889********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  GSBRNA2T00134763001  92 HVCQAAVETVLR 103
                          ******998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.8441107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSCNGCRVLR IGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRASLMS LISAAPEPNR  60
PALFQSLLFE ACGRTVNPVN GAVGMLWTVN WHVCQAAVET VLRGGTLRPI SDLPESPSLN  120
SSDESTEIWR MQRRDGFSTS GSKLSTTGMK ESLVNRTRSK TEWSEQDMEL QLNPGLALTG  180
PVVPVPFLPP PQFSKAVNSD HPGSPSEESV TATSCYENGI SGDGYRNKRE RKLFNLFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134763001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738741e-125AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721441e-125AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229761e-125AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710644.11e-176LOB domain-containing protein 39
SwissprotQ9SZE81e-118LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0D3E2991e-161A0A0D3E299_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DMP71e-161A0A3P6DMP7_BRAOL; Uncharacterized protein
STRINGBo9g018500.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-111LOB domain-containing protein 39
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]