PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134540001
Common NameGSBRNA2T00134540001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 181aa    MW: 18821.1 Da    PI: 11.0722
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134540001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.12.1e-40271412110
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 
                          a+kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+ +       
  GSBRNA2T00134540001  27 AVKKPPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPFA--Lgkr 113
                          79*******************************************************************777.22333332221..0224 PP

                  TCP  89 .....kaaksaa.kskksqksaasalnl 110
                               + ++++   ++++q++a++a ++
  GSBRNA2T00134540001 114 gvragEGEAATLfVRQQQQQQASAAAAM 141
                          5666633333332333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.593387IPR017887Transcription factor TCP subgroup
PfamPF036345.0E-3333128IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTSNDGSGPN GVIAEHPSAV NKGTLNAVKK PPAKDRHTKV DGRGRRIRMP IICAARVFQL  60
TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA SLSTSSPFAL GKRGVRAGEG  120
EAATLFVRQQ QQQQASAAAA MGEASAARVG NYLPGHHLNL LASLSGGNTG SGRREEDNPR  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134540001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893321e-112AC189332.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630257.12e-96PREDICTED: transcription factor TCP21-like
SwissprotQ9FMX23e-65TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0D3B0A04e-95A0A0D3B0A0_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QFI34e-95A0A3N6QFI3_BRACR; Uncharacterized protein
TrEMBLA0A3P6AN884e-95A0A3P6AN88_BRAOL; Uncharacterized protein
STRINGBo3g004850.17e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.11e-42TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]