PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134427001
Common NameGSBRNA2T00134427001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 276aa    MW: 31713.5 Da    PI: 9.8477
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134427001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.64.4e-3244150199
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k ltpsdv+k++rlv+pk++ae++        ++  e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+  D+v F
  GSBRNA2T00134427001  44 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnttisDNADEKGTLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKQLDPADVVFF 133
                          99*****************************99966667899************************************************ PP

                          EE-SSSEE..EEEEE-S CS
                   B3  83 kldgrsefelvvkvfrk 99 
                          +++++++++l+++++r+
  GSBRNA2T00134427001 134 QRQRSDSRRLFIGWRRR 150
                          *99889999******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-4038157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-2939151IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-2543141No hitNo description
SMARTSM010194.7E-2344151IPR003340B3 DNA binding domain
PROSITE profilePS5086313.56344151IPR003340B3 DNA binding domain
PfamPF023622.9E-2944150IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSVNHYSTDN HHALFWQNLH TTDTSEPTTT AAAWLSEDQK EYLFEKSLTP SDVGKLNRLV  60
IPKQHAEKYF PLNTTISDNA DEKGTLLSFE DESGKCWRFR YSYWNSSQSY VLTKGWSRYV  120
KDKQLDPADV VFFQRQRSDS RRLFIGWRRR GQSSSSAANP TSYSSSMTAP PYSNYSNRPA  180
HSEYSHYGIK LTTLYTNIYI FHIRKYRYKE TISLLQKKLN KKSAILYKGI SFATAAAAES  240
TTTKTCTIIT LLTPQPHNMN IGFTGDTMKQ VEDRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-494116211129DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134427001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026882e-74CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0067002e-74AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628242.11e-150PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
RefseqXP_013722542.11e-150PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
SwissprotQ9FNI31e-91Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A078CV170.0A0A078CV17_BRANA; BnaC03g02500D protein
STRINGBra005886.1-P1e-117(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-85B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]