PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134264001
Common NameGSBRNA2T00134264001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 321aa    MW: 35603.6 Da    PI: 6.8033
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134264001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.11.7e-2466148271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr+++ k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++++k  ++ei w+g
  GSBRNA2T00134264001  66 NGRGLRQFSLK---VCEKVESkGRTTYNEVADELVAEfalpnnedtspdqqqyDEKNIRRRVYDALNVLMAMDIVSK-YQKEILWRG 148
                          789********...*****999*******************************************************.9999***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.3E-1221320IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.7E-4361154IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.2E-3165148IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-2267148IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.39E-2068149IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.14E-40153256IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.36E-40155281No hitNo description
SMARTSM011381.7E-62155309IPR014889Transcription factor DP, C-terminal
PfamPF087811.6E-42156285IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTTTPSNSAQ SVSSSGSMGS PSSRTEQTTT VATTPASDDP ASQLASGSGK KKKKRRGQRA  60
SGPDKNGRGL RQFSLKVCEK VESKGRTTYN EVADELVAEF ALPNNEDTSP DQQQYDEKNI  120
RRRVYDALNV LMAMDIVSKY QKEILWRGLP RTSLSDIQEL KAERLSLRNR IEKKTEYSQE  180
LEEHHVGLQN LIRRNEHLYS SGNAPSGGVT LPFILVQTRP HATVEVEISE DMQLVHFDFN  240
TTPFELHDDN FVLKTMKFCD QPPLNNGHNN NSHETSHSFV PEDNKEGLST DPKLPQQPVN  300
APVTSPPLSG IIKSSVKTEN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3659153193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14955KKKKKRR
25055KKKKRR
35155KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.189060.0leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134264001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130756.10.0PREDICTED: transcription factor-like protein DPB isoform X2
RefseqXP_013724835.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-165DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM4CNH50.0M4CNH5_BRARP; Uncharacterized protein
STRINGBra005763.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-147Transcription factor DP
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]