PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134217001
Common NameGSBRNA2T00134217001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 286aa    MW: 32458 Da    PI: 8.6152
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134217001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.98.1e-2451133371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  GSBRNA2T00134217001  51 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikhnaekplneneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 133
                          5799999999...****9999********************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.1E-943280IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.109.3E-3646137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.9E-2849133IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-1852134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.8E-2052133IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440749.68E-34140266No hitNo description
CDDcd144584.01E-26140241IPR014889Transcription factor DP, C-terminal
SMARTSM011388.3E-40140285IPR014889Transcription factor DP, C-terminal
PfamPF087816.8E-30141259IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEMDLTVTPE KQRNRHAVRL VKTPVRRKLI ADDDDDHEIG TEKKGQSRTA GGGLRQFSVM  60
VCQKLEAKKI TTYKEVADEI ISDFATIKHN AEKPLNENEY NEKNIRRRVY DALNVFMALD  120
IIARDKKEIR WKGLPITCKK DVEEVKRDRN KVMNSVQKKA VFLKELREKV SSLESLMLRN  180
QEMAVKTEGP AEGFTLPLIL LETNPHAVVE IEISEDMQLV HLDFNTTPFS VHDDAYILKL  240
MQEHKLQQNR ASSSSSTHHQ SQHSSSSSCI ASGTSGPVCW KSRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2551135990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.140290.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Low expression at the G1/S transition and increases during the S phase. S/G2 transitions. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Strongly expressed in the actively dividing tissues of the shoot apical meristem, young leaf primordia, the vascular tissues of the maturing leaf primordia and axillary buds. {ECO:0000269|PubMed:11889041}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134217001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625919.10.0PREDICTED: transcription factor-like protein DPA
SwissprotQ9FNY31e-172DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A3P5ZVW70.0A0A3P5ZVW7_BRAOL; Uncharacterized protein
STRINGBo3g001900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-172Transcription factor DP
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]