PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129681001
Common NameGSBRNA2T00129681001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 171aa    MW: 20459.8 Da    PI: 6.5687
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129681001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.31.6e-0860105448
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea.eNkaLkke 48 
                           kr rr+ +NRe+ArrsR RK+++i e +  v++L+   N  L ++
  GSBRNA2T00129681001  60 EKRLRRMVSNRESARRSRMRKRKQIREMKMNVEQLTVdANYNLYNK 105
                          59*********************************85145555433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.00657129IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.1635995IPR004827Basic-leucine zipper domain
PfamPF001702.8E-760119IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-761108No hitNo description
Gene3DG3DSA:1.20.5.1705.1E-761127No hitNo description
CDDcd147024.13E-1262114No hitNo description
PROSITE patternPS0003606479IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEAEYQHCSH YFNLYEGDAS QNDHFNLQNP QNDHDHDHDQ DLHVHDHCSH PQASVVMDQE  60
KRLRRMVSNR ESARRSRMRK RKQIREMKMN VEQLTVDANY NLYNKVISLL EKTRQILHEN  120
SQLEEKLSYF HQYFMEDRMV LPGNNIDCDI TRQYLHQPTC YLLDSISPSI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782MRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129681001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2410040.0AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491438.17e-33PREDICTED: bZIP transcription factor 2
TrEMBLA0A397ZZ651e-105A0A397ZZ65_BRACM; Uncharacterized protein
TrEMBLM4CP331e-105M4CP33_BRARP; Uncharacterized protein
STRINGBra005971.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17031811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08141.11e-16basic leucine-zipper 75
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]