PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127852001
Common NameGSBRNA2T00127852001, LOC106379359
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 149aa    MW: 16057.6 Da    PI: 10.3099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127852001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00123355123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F++   L  H  +H
  GSBRNA2T00127852001 33 FACKTCNKEFPSFQALGGHRASH 55
                         78**********99999998887 PP

2zf-C2H212.30.00057799123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++Cp+Cg  F     L  H+r+H
  GSBRNA2T00127852001 77 HECPICGAEFAVGQALGGHMRKH 99
                         79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.93E-83199No hitNo description
PfamPF139126.4E-133257IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3693360IPR007087Zinc finger, C2H2
SMARTSM003550.233355IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.00177101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.9E-1077101IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6477101IPR007087Zinc finger, C2H2
SMARTSM003550.0637799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEKEREIEMI NKMASCLIYL SKAHQHDTKS RVFACKTCNK EFPSFQALGG HRASHRRSAA  60
LEGHATPSPK RVKPVKHECP ICGAEFAVGQ ALGGHMRKHR GGGGSRSLAP APVTMKKSGG  120
GNGKRVLCMD LNLTPGENDD LKLELGRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127852001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635319.11e-106PREDICTED: zinc finger protein ZAT12-like
RefseqXP_013674788.11e-106PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424101e-38ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLA0A078CQ501e-106A0A078CQ50_BRANA; BnaC04g39930D protein
TrEMBLA0A0D3C2P01e-106A0A0D3C2P0_BRAOL; Uncharacterized protein
STRINGBra035678.1-P1e-103(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-79C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]