PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124693001
Common NameGSBRNA2T00124693001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 335aa    MW: 37320 Da    PI: 6.3964
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124693001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.51.6e-09140187552
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                          k+++r ++NR +A rs +RK  +i +Le++v++L+ae  +    l+ +
  GSBRNA2T00124693001 140 KKAKRIMSNRQSAARSKERKTRYIMQLEKRVQALQAEYATRSAYLSLI 187
                          89**********************************976655555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-12136200IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.117138201IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-8139212No hitNo description
PfamPF001709.4E-10140198IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-8140188No hitNo description
CDDcd147032.06E-17141186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDHDPSNAKP NQHPPLTNPS PTSFRGPNHR RAHSEDQFRL PEDLDLSETF SGFYDLGSED  60
DLFCSYMDVE NLGSGLGPGN DNPFPAENGG GGGREEEGGR ERPRHRHSVS VDGSSSLESI  120
EARKAMTPEQ LAELWVVDPK KAKRIMSNRQ SAARSKERKT RYIMQLEKRV QALQAEYATR  180
SAYLSLINGD IDGLLSENTK LKLQIQMVEQ KAKLHDALND KMKRESEMMR FAAAGQVSHS  240
DAYNLQMARM QYSQQQAFFQ QQADAQNMQQ MTPQFHHFQP NNNQNPPLMH HATSNASGQS  300
HSYAEEDHLG SLQGLDIGNG SNFGRSSESS SSTK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124693001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740579.10.0transcription factor RF2b-like
SwissprotO228731e-143BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A078F3F60.0A0A078F3F6_BRANA; BnaA03g19140D protein
STRINGBra000195.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2331234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-107bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  4. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]