PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124424001
Common NameGSBRNA2T00124424001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 353aa    MW: 39988.5 Da    PI: 5.3064
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124424001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.61.1e-38852282123
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssss 81 
                          a+kkdrhskihT++g+RdRRvRls+ + ++fFdLqd+LGfdk+skt++WLl+++ +aikel++           +++  + +        
  GSBRNA2T00124424001  85 AVKKDRHSKIHTAQGLRDRRVRLSIGISRQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkklnnnvedfGNDGGNVV-------H 167
                          89**************************************************************554433333311111222.......1 PP

                  TCP  82 asnsssg.....................kaaksaakskksqksaasalnlak.esrakararar 123
                          ++    +                     ++   + k+ +++k++++++n++   sraka+ +a+
  GSBRNA2T00124424001 168 EED---DydddnvgdnsfvygsspysfeEEVLCEVKKAEKRKKKTEMSNISSkGSRAKAKGKAK 228
                          111...1122333455677888888886444555577778888888888887799999998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-3786230IPR005333Transcription factor, TCP
PROSITE profilePS5136935.05487145IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSSSNNGYNN GSNNGVYPLS LYLPSLSGQQ DIIRNPYNHQ LTASPGQMLS AVPESLMDYM  60
EFNSNNVMNQ QSFEIPEVSR EIKKAVKKDR HSKIHTAQGL RDRRVRLSIG ISRQFFDLQD  120
MLGFDKASKT LDWLLKKSRR AIKELVQEKK LNNNVEDFGN DGGNVVHEED DYDDDNVGDN  180
SFVYGSSPYS FEEEVLCEVK KAEKRKKKTE MSNISSKGSR AKAKGKAKGI TIDMTNDHPE  240
TASEIIQTEI MDPFKRSIIF NEGEEMTHSF YKESIQESDN HECITKTEVN LPMNMDQGYN  300
QHYGALMLKD QGSSSNYNAI LPQNFDCDYN PNPFIDQLFC GVTNTNFFRG IV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1492145154Putative transcription factor PCF6
5zkt_B2e-1492145154Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124424001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013706058.10.0transcription factor TCP1-like
SwissprotQ9FYG71e-156TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A078F2Y50.0A0A078F2Y5_BRANA; BnaA07g25110D protein
STRINGBra004097.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.11e-137TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]